{"id":187,"date":"2024-08-06T16:59:28","date_gmt":"2024-08-06T14:59:28","guid":{"rendered":"https:\/\/www.ephyswiki.org\/?post_type=yada_wiki&#038;p=187"},"modified":"2024-11-15T15:38:05","modified_gmt":"2024-11-15T14:38:05","slug":"cell-curation","status":"publish","type":"yada_wiki","link":"https:\/\/www.ephyswiki.org\/?yada_wiki=cell-curation","title":{"rendered":"Cell curation"},"content":{"rendered":"\r\n<p>Manual curation of electrophysiology spike sorted units is laborious and difficult to reproduce. See\u00a0<a href=\"https:\/\/www.youtube.com\/watch?v=8Gauba3KzvM&amp;list=PLfhWmWntvjl7kljKozClpjS29DoY8V5pB&amp;index=12\" rel=\"nofollow\">this talk<\/a> at the annual Neuropixels course about quality control. There are tools to help.<\/p>\r\n<p><strong>Bombcell<\/strong> <a href=\"https:\/\/github.com\/Julie-Fabre\/bombcell\" data-type=\"link\" data-id=\"https:\/\/github.com\/Julie-Fabre\/bombcell\">Bombcell <\/a>is a powerful toolbox that addresses this problem, evaluating the quality of recorded units and extracting essential electrophysiological properties. Bombcell can replace manual curation or can be used as a tool to aid manual curation.<\/p>\r\n","protected":false},"author":5,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"open","ping_status":"open","template":"","meta":{"_bbp_topic_count":0,"_bbp_reply_count":0,"_bbp_total_topic_count":0,"_bbp_total_reply_count":0,"_bbp_voice_count":0,"_bbp_anonymous_reply_count":0,"_bbp_topic_count_hidden":0,"_bbp_reply_count_hidden":0,"_bbp_forum_subforum_count":0,"footnotes":""},"wiki_cats":[11,12],"wiki_tags":[],"class_list":["post-187","yada_wiki","type-yada_wiki","status-publish","hentry","wiki_cats-analysis","wiki_cats-tips"],"_links":{"self":[{"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=\/wp\/v2\/yada_wiki\/187","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=\/wp\/v2\/yada_wiki"}],"about":[{"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=\/wp\/v2\/types\/yada_wiki"}],"author":[{"embeddable":true,"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=187"}],"version-history":[{"count":2,"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=\/wp\/v2\/yada_wiki\/187\/revisions"}],"predecessor-version":[{"id":199,"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=\/wp\/v2\/yada_wiki\/187\/revisions\/199"}],"wp:attachment":[{"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=187"}],"wp:term":[{"taxonomy":"wiki_cats","embeddable":true,"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=%2Fwp%2Fv2%2Fwiki_cats&post=187"},{"taxonomy":"wiki_tags","embeddable":true,"href":"https:\/\/www.ephyswiki.org\/index.php?rest_route=%2Fwp%2Fv2%2Fwiki_tags&post=187"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}